UC Davis
Workshop in Applied Phylogenetics
at Bodega Marine Laboratory, Bodega Bay, California, March 11–18, 2017
Sponsored by the
University of California, Davis and Bodega Marine Laboratory
Schedule
| Day | Morning | Afternoon | Evening |
| Saturday March 11 | “State of the Union” (Peter Wainwright) | ||
| Sunday March 12 | Continuous-time Markov Models and Bayesian Inference (Brian Moore)probability and CTMC slides | RevBayes and MCMC (Sebastian Hohna and Brian Moore) MCMC diagnosis slides |
Next Generation Sequencing (Joanna Chiu)NGS_slides |
| Monday March 13 | Big data and Phylogenomics (Bob Thomson and Jeremy Brown) model complexity and model selection slides partitioned models slides simulated data for class activity |
Big data and Phylogenomics (Bob Thomson and Jeremy Brown) model fit slides big data discussion slides |
Work on Projects |
| Tuesday March 14 | Divergence-time Estimation (Rachel Warnock and April Wright) divergence time slides |
Lineage Diversification (Sebastian Hohna and Mike May) constant-rate diversification tutorial time-dependent diversification tutorial character-dependent diversification tutorial branch-specific diversification tutorial |
Multispecies Coalescent and Species Delimitation (Bruce Rannala) |
| Wednesday March 15 | Discrete-trait Evolution (April Wright and Michael Landis) discrete-trait slides discrete-trait evolution tutorial |
Field Trips | Work on Projects |
| Thursday March 16 | Biogeography (Michael Landis) biogeography slides |
Continuous-trait Evolution (Sam Price) continuous-trait tutorial |
Work on Projects |
| Friday March 17 | Student presentations | Student presentations | PARTY!! |
| Saturday March 18 | Depart |
Instructor Availability
| Instructor | Sun | Mon | Tues | Wed | Thurs | Fri |
| Peter Wainright | ||||||
| Brian Moore | ||||||
| April Wright | ||||||
| Bob Thomson | ||||||
| Rachel Warnock | ||||||
| Sebastian Hohna | ||||||
| Jeremy Brown | ||||||
| Joanna Chiu | ||||||
| Michael Landis | ||||||
| Sam Price | ||||||
| Bruce Rannala |