- *BEAST
- Biogeography with BayArea
- Continuous Character Evolution
- Continuous Traits 2015
- Data Visualization in R
- Divergence Time Estimation using BEAST
- Evolution of Discrete Binary Traits in BayesTraits
- Garli
- Lineage diversification in R
- MCMC Diagnosis
- Model Selection
- Morphological Evolution in R
- MrBayes
- Phylogenetic Inference using MrBayes v3.2
- RevBayes: Biogeography
- RevBayes: Relaxed Clocks & Calibrated Time Trees
- State-dependent diversification of traits
- The Gamma Distribution